Output legal format for the remaining (no gems) part of transcript

Leonid Spektor spektor at andrew.cmu.edu
Wed Feb 21 16:28:16 UTC 2018


Amber,

	I am not sure why +n and +a option combination in GEM was disabled. I have changed CLAN to allow GEM to work when both of those options specified. Please get the new CLAN and it should work for you.


Leonid.

> On Feb 21, 2018, at 09:41, Amber Muhinyi <ambalashes at gmail.com> wrote:
> 
> Hi Leonid
> 
> Adding +a leads to this error message: Error: options "+a" and "+n" can not be used together.
> 
> I need to include +n (I think), as these are lazy gems. 
> 
> Is there a way around?
> 
> Thanks
> Amber
> 
> On Wednesday, 21 February 2018 14:27:06 UTC, Leonid Spektor wrote:
> Amber,
> 
> 	To get everything except gems add +a option to GEM commands line.
> 
> 
> Leonid.
> 
>> On Feb 21, 2018, at 07:29, Amber <ambal... at gmail.com <javascript:>> wrote:
>> 
>> Hi there
>> 
>> Is there something similar to the -s switch that can be used with GEM so that it will create files of the REMAINING parts of the transcripts, i.e., minus the gem parts? I know how to create new files for the gem parts of a given transcript (e.g., gem +t*PAR +t%mor +sSandwich +n +d1, using the example from the manual). But it would be useful to also have files for the leftover parts of the transcripts. Is this possible?
>> 
>> Any advice would be appreciated, 
>> 
>> Amber 
>> 
>> 
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