<html><head><meta http-equiv="Content-Type" content="text/html; charset=us-ascii"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">Amber,<div class=""><br class=""></div><div class=""><span class="Apple-tab-span" style="white-space:pre"> </span>To get everything except gems add +a option to GEM commands line.<br class=""><div class="">
<div style="color: rgb(0, 0, 0); font-family: 'Lucida Grande'; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px;"><br class="Apple-interchange-newline"><br class=""></div><div style="color: rgb(0, 0, 0); font-family: 'Lucida Grande'; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px;">Leonid.</div>
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<div><br class=""><blockquote type="cite" class=""><div class="">On Feb 21, 2018, at 07:29, Amber <<a href="mailto:ambalashes@gmail.com" class="">ambalashes@gmail.com</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div dir="ltr" class=""><div class="">Hi there</div><div class=""><br class=""></div><div class="">Is there something similar to the -s switch that can be used with GEM so that it will create files of the REMAINING parts of the transcripts, i.e., minus the gem parts? I know how to create new files for the gem parts of a given transcript (e.g., gem +t*PAR +t%mor +sSandwich +n +d1, using the example from the manual). But it would be useful to also have files for the leftover parts of the transcripts. Is this possible?</div><div class=""><br class=""></div><div class="">Any advice would be appreciated, </div><div class=""><br class="">Amber </div><div class=""><br class=""></div></div><div class=""><br class="webkit-block-placeholder"></div>
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