Output legal format for the remaining (no gems) part of transcript

[Leonid Spektor]

Amber,

	To get everything except gems add +a option to GEM commands line.


Leonid.

> On Feb 21, 2018, at 07:29, Amber <ambalashes at gmail.com> wrote:
> 
> Hi there
> 
> Is there something similar to the -s switch that can be used with GEM so that it will create files of the REMAINING parts of the transcripts, i.e., minus the gem parts? I know how to create new files for the gem parts of a given transcript (e.g., gem +t*PAR +t%mor +sSandwich +n +d1, using the example from the manual). But it would be useful to also have files for the leftover parts of the transcripts. Is this possible?
> 
> Any advice would be appreciated, 
> 
> Amber 
> 
> 
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