Corpora: protein name list

[Hsin-Hsi Chen]

The following summarized the response to the “protein name list”.

Thanks.

 

1.          from Fredrik Olsson

The SwissProt protein knowledge base can form a base for a list of
protein names.  It is available at:
http://www.expasy.ch/sprot/sprot-top.html

 

2.          from Lee Gillam

Try: www.genomicglossaries.com

 

3.     from George Demetriou

You can find lists of protein names in the following sites:
SCOP database: 
http://scop.mrc-lmb.cam.ac.uk/scop/

CATH database:
http://www.biochem.ucl.ac.uk/bsm/cath/index.html

Protein Data Bank:
ftp://ftp.rcsb.org/pub/pdb/ 

Enzyme names from Expasy:
ftp://www.expasy.ch/databases/enzyme

 

4.     from Bushra Zawaydeh

you can see the UMLS. They have it.
http://www.nlm.nih.gov/research/umls/

 

5.    from Philip Resnik

You might find GenBank useful (http://www.ncbi.nlm.nih.gov/Genbank/).
In particular, there is a protein database "compiled from a variety of
sources, including SwissProt, PIR, PRF, PDB" (see the information at
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein).
Also, the SWISS-PROT database can be downloaded; see the "downloading"
link at http://www.expasy.ch/sprot/sprot-top.html.  Either of these
should provide a source from which a protein name list could be
extracted.





Hsin-Hsi Chen

National Taiwan University

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